Comparative Genomics

This book constitutes the refereed proceedings of the 19th Annual RECOMB Satellite Workshop on Comparative Genomics, RECOMB-CG which took place in La Jolla, USA, during May 20-21, 2022.
The 18 full papers included in this book were carefully reviewed and selected from 28 submissions. The papers were organized in topical sections on evolution; phylogenetics; homology and reconciliation; genome rearrangements; metagenomics; and genomic sequencing.

Contenu

Evolution.- On the Comparison of Bacteriophage Populations.- Syntenic Dimensions of Genomic Evolution.- Phylogenetics.- Fast and Accurate Branch Support Calculation for Distance-based Phylogenetic Placements.- The Sackin Index of Simplex Networks.- Phylogenetic Placement Problem: A Hyperbolic Embedding Approach.- Phylogenetic Network Dissimilarity Measures That Take Branch Lengths Into Account.- Homology and Reconciliation.- The Complexity of Finding Common Partitions of Genomes with Predefined Block Sizes.- Reconciliation with Segmental Duplication, Transfer, Loss and Gain.- Quantifying Hierarchical Conflicts in Homology Statements.- On Partial Gene Transfer and its Impact on Gene Tree Reconstruction.- Genome Rearrangements.- Sorting by k-Cuts on Signed Permutations.- A New Approach for the Reversal Distance with Indels and Moves in Intergenic Regions.- Chromothripsis Rearrangements Are Informed by 3D Genome Organization.- Metagenomics.- Using Computational Synthetic Biology Toolsto Modulate Gene Expression within a Microbiome.- Metagenomics Binning of Long Reads Using Read-Overlap Graphs.- A Mixed Integer Linear Programming Algorithm for Plasmid Binning.- Genomic Sequencing.- Benchmarking Penalized Regression Methods in Machine Learning for Single Cell RNA Sequencing Data.- Deciphering the Tissue-speci c Regulatory Role of Intronless Genes Across Cancers.